Templates are aware of two Velocity variables, what works with Email this Issue's macros:
These variales are not working with the built-in Jira macros!
Add to the beginning of the template:
#set($disableLinks="true")
Disabling links via this variable may not remove all links from the final email, custom fields provided by third-party add-ons may still generate links however that cannot be suppressed. Also, your mail client like Outlook may recognize links even if they are not inserted as links in the template.
#set($disableAvatars="true")
This will prevent rendering user avatars, issue icons (type, priority, resolution).